hidden error message if importing method config into workspace
If a method config from a WDL is imported to a workspace and and error is encountered, then the error is NOT visible in the UI/GUI. To see the error, I have to go to the developer tools network tab....
View ArticleExtremely slow API calls on Data tab
On the data tab, I am seeing very slow performance trying to view entities. It looks like the API calls are taking almost 20 seconds (see attached image). I'm seeing the same issue using fissfc from...
View Articlecan't save workspace attributes?
In FC PROD 1) I created a brand-new workspace, 2) tried to use the UI/GUI to create a single attribute key/value pair with key "junk" and value "junk". 3) I hit "Save" and the and get a spinner waiting...
View Articleerror in workspace deletion?
In trying to delete a workspace I got the error below (I'm not sure what I did that caused the error/issue) : Confirm Delete Are you sure you want to delete this workspace? Bucket data will be deleted...
View ArticleMethod configuration import error when specifying runtime setting with...
I'm trying to specify runtime parameters in the WDL as follows: runtime { docker: "broadinstitute/gtex_rnaseq" memory: "${memory}GB" disks: "local-disk ${disk_space} HDD" cpu: "${num_threads}" } This...
View Articleconfusing/inconsistent job status
From the monitor tab the HCC1954 (pair) analysis is marked with a red ! and "Done". (see attachments please!) Drilling down reveals an "Unknown" status. Further examination into the workflow and the...
View Articleif uploading an erroneous TSV that is NOT a participant file, the upload...
I uploaded a participants TSV file successfully. Then, when I try to upload a samples file and the system reports an error, I save and then click import file to select it, but then the upload button...
View Articlepermission error false alarm in delocalizing files?
In the LOG I see : 2016/04/29 13:07:43 I: Switching to status: delocalizing-files 2016/04/29 13:07:43 I: Docker file /cromwell_root/CallSomaticMutations_131_Prepare-rc.txt maps to host location...
View ArticleFire Cloud registration
I could not complete registration, though I have got e-mail. I clicked the link in the confirmation e-mail but it failed to complete. Could you tell me how to solve this problem?
View Articleregistration
I registered FireCloud more than 1 week ago and obtained the message online: "Thank you for registering. Your account is currently inactive. You will be contacted via email when your account is...
View Articlenot received any activation email
Hi team, Attending the NCI Cloud workshop for Firecloud in 10 mins, but not received any activation email. I have signed up and registered many weeks back! Thanks, Anand
View Articlethis doesn't make sense
Did NCI ever set up access to firecloud and TCGA access via firecloud? Is firecloud ready for testing? I can't seem to get past "you need google billing" account.
View Article[Errno 8] _ssl.c:510: EOF occurred in violation of protocol
I always got below message. I am successfully run gcloud auth login but I cannot run: firecloud -m push -s toru -n helloworld2 -t Workflow -y "hello world" helloworld.wdl. This gives me below error....
View Articlehow to creat participant set
I am trying to follow the hands on for June 15 workshop materials and have a question hope to get your help. On page 15 for the HelloWorld workflow exercise, launch the method on all participants in a...
View Articlegcloud init
I installed gcloud sdk and launch gcloud init I have multiple account associated with my google account, and I got Pick cloud project to use: [1] [dazzling-sector-....] [2] [isb-cgc-01-....] [3]...
View Articleusability issues ...
1 When I "log in, I see "Profile". It says "Linked NIH Account", but then says in read on the next line "Failed to link NIH account". Which seems like a contradiction to me. Which is it? Is there a way...
View Articledocker run
Iād like to push a private gene fusion Docker image to Broad repository to run it on Firecloud, could you point me to some documentation or tutorials on how to write a wdl file to reference and...
View ArticleGenomeStrip on FireCloud?
Dear FireCloud team Is GenomeStrip available on your platform? Or any plan to provide it there? Thank you Amin Zia
View ArticleFor uploading large private data, does firecloud support other transfer...
Uploading huge sample data from other workstation?
View Articledocker, local test
I am testing a soapfuse docker image locally and failed: WDL file, workflow soapfuseref { call soapfuseref } task soapfuseref { String genome File cytoB File HGNC File fa File gtf command {...
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