JesAsyncBackendJobExecutionActor failed and didn't catch its exception. :...
by network tab inspection (from google developer tools) I saw : }, "submission": "2017-03-30T21:13:32.218Z", "status": "Failed", "failures": [{ "message": "JesAsyncBackendJobExecutionActor failed and...
View Article"Exception" Displayed on Workspace; Cannot Launch Anything
"Exception" is displayed on the workspace without further explanation. This was not present earlier today, and I was able to launch jobs. Now nothing happens when I click 'Launch'. Please help. Thanks!
View Articlebrief false-alarm immediately after submission, but soon disappears?
After a submission, I'll enter the workflow and for the status I'll see the red yield sign as if there is an error state. BUT moments later (a second or two) unless there is a "genuine" error ,after a...
View Articlequick call-caching question
hopefully this is indeed "quick"... once a task is run is its cache immediately enabled? For example, if I run a task, do I have to wait an hour before its output is re-usable and I can take advantage...
View Article"Import from file" does not appear to respond
Under the Data tab, I press "Import Data..." Two buttons then appear, "Import from file" and "Copy from another workspace". When I press "Import from file" it allows me to choose a file. After choosing...
View Articledelay in call-cache hitting?
I ran a job. It was the first for call-caching so it was a designed to be a "miss". Indeed it did "miss". Then, less than 5 min later, I asked Chet to run it to test the call-caching hitting. But when...
View Articlehash for call-caching should be from RepoDigest?
I have seen cases where the hash from the ID is different than the hash in the RepoDigest. In such cases is it correct to put the RepoHash instead? (assuming a push to the repo has been done?) I tried...
View Articleglobbing output directory? know paths?
I have in my WDL output a glob of an array of files like this : Array[File] ais=glob("*.png") Then in my output (in the bucket) I see a list file and a "directory" (both having a hash) listing and...
View Articleidea for enhancment : autosize
WDL tasks localize during JES runs using WDL like so: task myTask { File myFileToLocalize Array[File] otherFilesToLocalize ... command <<< #process ${myFileToLocalize} .... #process...
View Articlesize arithmetic issue?
I tried to do "size arithmetic" in WDL for disk size calculation. The main objective of the size arithmetic is to calculate size of VM disk "manually" using WDL like this: call some_task { input: a=a,...
View ArticleHalf of my submission's workflows are stuck in the submitted state
I ran a submission that launched parallel workflows on 462 samples. Each workflow simply downloads a single file from the GDC. These files are relatively small: 150MB - 400 MB, and the workflow, when...
View Articleidea for automatic hard-drive size increases
@gordon123 was mentioning (in person) (with @birger ) of a possibility that FC could implement a disk size auto-increase feature where disk-size is monitored and periodically made bigger if space is...
View ArticleHow can I see the details of billing for a Firecloud project
How can I see the details (and summary for that matter) of billing for a Firecloud project? I am not Bill Administrator on the attached billing account, but I am a Billing Approver on the billing...
View Articlelong synopsis did not give error?
A user ( @adunford ) tried to upload a WDL via the UI. He entered a synopsis text/entry that was apparently longer than 80 characters. The UI did not present an error. He'd click the upload button,...
View Articlemethod repo's snapshot incrementing not distinguishing between workflows and...
I have a workflow named "test_workflow" which I'm publishing to the Method Repo. Let's suppose it's snapshot id is 10. Now suppose I have a method configuration with the identical name,...
View ArticleSupported features of FC/Cromwell/WDL
Where is the definitive place that one can look to see which features of WDL are supported in the latest version of Cromwell, and which features of Cromwell are supported in the latest version of...
View Articleworkflow had status "submitted" during 5 days
I have a workflow which was "submitted" during 5 days and then it was started. I stopped it but it has incorrect status "runnable" till now and strange "workflow timing". What is the reason of so long...
View ArticleSpecifying custom machine types in cromwell/WDL
When specifying memory and cpus, cromwell appears to select the closest match among existing GCE machine types. To optimize costs, it would be very useful if custom machine types could also be...
View ArticleFailed to link NIH account
I've made a dbGAP account and gotten authorization for the controlled access TCGA data, but when I go to Firecloud I still do not have access to the controlled access workspace. When I go to link my...
View Articledocker image unable to pulled
Hi, I have uploaded a new workflow and am trying to get it running in Firecloud. However, the docker image is unable to be pulled. The image is hosted at broadinstitute/bloodbiopsy_ichorcna, which I...
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