Hi
Workflow "bam_dates_workflow" in workspace broad-firecloud-pcawg/damage is failing despite that it runs fine on a google VM using cromwell and the same input parameters and files used by the Firecould test job ( Submission ID 9fe207e9-8d16-479c-bb75-1701f61e3016). There are no output files to look at other than a workflow log that says:
2017-03-12 23:15:39,914 INFO - MaterializeWorkflowDescriptorActor [UUID(423eb3cd)]: Call-to-Backend assignments: bam_dates_workflow.bam_dates -> JES
2017-03-12 23:15:39,966 INFO - $j [UUID(423eb3cd)]: Copying workflow logs from /cromwell-workflow-logs/workflow.423eb3cd-e183-4836-b1ff-93dc4b0c0235.log to /9fe207e9-8d16-479c-bb75-1701f61e3016/workflow.logs/workflow.423eb3cd-e183-4836-b1ff-93dc4b0c0235.log
The wdl is attached. Since this workflow runs fine outside of Firecloud, what options are there within Firecloud to look for the problem and fix it?
Chip