I launched an analysis using GATK Mutect2_pon method to create a panel of normals. This analysis has failed – I got a message regarding the error however I do not know how to fix it. There is a problem with copying .vcf and .vcf.idx files from a local disk to the google bucket associated with the workspace in which the analysis was performed.
I was wondering if I could share the workspace with GROUP_FireCloud-Support@firecloud.org and ask you to have a look at the workspace/method configuration and to advise how to fix this error? Please provide me with your email address that I could use to share with you the submission and workflow ids as well as any other important details.
Thank you for your help!