Dear GATK4 team,
This is Bo from the Broad Institute. I am running "gatk/PreProcessingForVariantDiscovery_GATK4" on my data in FireCloud and got the following error message:
Workflow failed
causedBy:
message: Unable to complete JES Api Request
causedBy:
message: Pipeline 11178155052716254973: Unable to evaluate parameters: parameter "PreProcessingForVariantDiscovery_GATK4.BaseRecalibrator.known_indels_sites_VCFs-0" has invalid value: ["gs://broad-references/hg19/v0/Mills_and_1000G_gold_standard.indels.b37.vcf.gz"]
Could you let us know what happened?
Thanks,
Bo