I have been using some of the WDL scripts that I wrote with the data in aryee-merkin/colon-seqcapepi workspace. The scripts seems to be working for all the samples that I have tried out so far. For one of the samples the job seems to be running for much longer time, even after few days it didn't complete the job or fail. So I had to abort the job. Following are the submission ID: 504d48e4-1e35-4253-bc61-6f432a1f4398 and workflow ID: b796c3e3-4676-4e01-a4d9-c7968e5d3e72
It is strange that I only see this behavior for this specific sample. I checked the log files but the error didn't seem apparent to me. Any help would be appreciated!