...or perhaps there is one, but it's beyond me. Here are the calls I see (together, for your enjoyment, the order in which they show up in the timing diagram):
{{
3. CheckBuild
2. dbRsIDsSize_string
6. ChangeCodingToChrPos
4. LiftOverPlinkFiles
1. ExtractRsIdFromVCF
8. StrandAmbiguousHarmonization
11. GetMoreExcludedAndPlot
5. RemoveHighMafAndChrXParVariants
13. FixMaleHetSitesConvertToBCF
12. ExcludeFlipRestAndGetFreq
7. ExcludeDupsAndIndels
10. ExcludeFlipAndGetFreq
9. PadhraigsScript
}}
Not sorted alphanumerically, not by execution order....so...what is it? It makes it quite annoying to find the task you are looking for.