Hi Firecloud,
I have some files in a google bucket which I am passing into a task with the following path type:
gs://[BUCKET_PATH]//[sub_directory]/mybam.bam
When running a task with these inputs, Firecloud immediately outputs an error, saying it couldn't resolve all the inputs, and outputs the problem file as:
[BUCKET_PATH]/[sub_directory]/mybam.bam
Note: The double slash (//) after [BUCKET_PATH] has been collapsed to one slash (/). It seems the full path is not the one being passed. Is this an issue with passing in files with double slashes in the middle of the full path or could it be something else?
I can provide examples if this would be helpful.
Thank you!
Daniel