In workspace nci-chip-su2c-gmail-com/SU2C-LUNG-data workflow esalinas/MutationCalling_Filter_v1-0_BETA failed in 4 of 97 exome pairs. The error message has something to do with CNA in R:
Stderr: Error in CNA(dat, contig, pos, data.type = "logratio", sampleid = sample_name) :
maploc must be numeric
Calls: source -> withVisible -> eval -> eval -> segment_data -> CNA
I've attached stdout, stderr, log, and intermediate files (for files of size < 1Mb) found in the bucket for one such job. Is this a question for the GAT4 ACNV team?