I am running analysis on a large cohort of around 900 samples on Firecloud. After starting the analysis, I timed out. I hit go again on the jobs and had another time out. After this, I looked at the Google Bucket, and found 2 directories with each of these runs. Neither of these jobs shows up in Monitor, but firecloud is running duplicate jobs now and dumping the same output in 2 different directories in the Goolgle Bucket. Now that I know that the jobs are running even though I received a time out error, I will not make this mistake again, but this seems to be an issue worth posting.
Thanks,
Daniel