Hi Firecloud team.
I have a multisample individual and for consistency I want to coclean the bams together.
I added samples/pairs to my individual entity, and that works well, but I need to output one bam per sample (--Nwayout flag from IndelRealigner)
In firehose I could make a loadfile tsv in my task, and then select "import tsv" as an output option.
Is it possible to annotate to anything other than the root entity? (e.g. in a simpler case even just the case sample of a pair)
-Dimitri