Quantcast
Channel: Ask the FireCloud Team — GATK-Forum
Viewing all articles
Browse latest Browse all 1147

URGENT: Job is done but Cromwell thinks it is still running?

$
0
0

I made another submission with a task that is marked as "Running" in the UI:

CallingGroup_Workflow.CallSomaticMutations_131_Prepare_TaskHide
Call #1:
ID:operations/ELO9xounKxj4qcfbptHpuyMg3orbxIMcKg9wcm9kdWN0aW9uUXVldWU
Status:
Running
Started:February 24, 2017, 1:45 PM (1 hour ago)
Ended:Pending...
Inputs:Show
Outputs:None
stdout:CallSomaticMutations_131_Prepare_Task-stdout.log
stderr:CallSomaticMutations_131_Prepare_Task-stderr.log
JES log:CallSomaticMutations_131_Prepare_Task.log

but google says it is "Done"

wm8b1-75c:workflows esalinas$ gcloud  alpha genomics operations describe operations/ELO9xounKxj4qcfbptHpuyMg3orbxIMcKg9wcm9kdWN0aW9uUXVldWU|head
done: true
metadata:
  '@type': type.googleapis.com/google.genomics.v1.OperationMetadata
  clientId: ''
  createTime: '2017-02-24T18:45:56Z'
  endTime: '2017-02-24T18:50:37Z'
  events:
  - description: start
    startTime: '2017-02-24T18:46:38.835076760Z'
  - description: pulling-image
wm8b1-75c:workflows esalinas$ 

In the upper-right I see:

Workflows: 50 Queued; 1125 Active; 0 ahead of yours

Is all of this expected behavior? is something wrong? I want for jobs to progress in a timely manner


Viewing all articles
Browse latest Browse all 1147

Trending Articles