I have a task that is "Running" (in FireCloud), .....
ClipReadsWF.CreateSequenceGroupingTSVHide
Call #1:
ID:operations/EMTjxKegKxiRwdyOoJGP8Vwg_eDe0bUCKg9wcm9kdWN0aW9uUXVldWU
Status:
Running
Started:02/03/2017 at 12:06:39 PM (33 minutes ago)
Ended:Pending...
Inputs:Show
Outputs:None
stdout:CreateSequenceGroupingTSV-stdout.log
stderr:CreateSequenceGroupingTSV-stderr.log
JES log:CreateSequenceGroupingTSV.log
...but is done according to Google....
wm8b1-75c:ClipReadsWork esalinas$ gcloud alpha genomics operations describe operations/EMTjxKegKxiRwdyOoJGP8Vwg_eDe0bUCKg9wcm9kdWN0aW9uUXVldWU|head -20
done: true
metadata:
'@type': type.googleapis.com/google.genomics.v1.OperationMetadata
clientId: ''
createTime: '2017-02-03T17:06:40Z'
endTime: '2017-02-03T17:08:06Z'
events:
- description: start
startTime: '2017-02-03T17:07:22.289751081Z'
- description: pulling-image
startTime: '2017-02-03T17:07:24.776778310Z'
- description: localizing-files
startTime: '2017-02-03T17:07:58.787590044Z'
- description: running-docker
startTime: '2017-02-03T17:08:02.422473479Z'
- description: delocalizing-files
startTime: '2017-02-03T17:08:03.123440248Z'
- description: copied 1 file(s) to "..."
startTime: '2017-02-03T17:08:04.806092942Z'
- description: ok
According to Google it finished over 30 min ago. The task is expected to take no more than 5-6 minutes. According to google the "Running-docker" was from 8:02.42 to 8:03.12 (less than one minute).
The rc file is in the bucket with return code 0.
wm8b1-75c:ClipReadsWork esalinas$ gsutil cat gs://fc-7119068c-40f9-4960-9dee-1d73730e9c1c/8a728caf-ac74-4cc3-a9cf-8b9923cea80c/ClipReadsWF/4d081440-5949-4b66-afc9-b4cbece4f823/call-CreateSequenceGroupingTSV/CreateSequenceGroupingTSV-rc.txt
0
@dlivitz suggested to use the network tab of the chrome developer tools and he saw some info related to call-caching so he suspect that there is something going on with it that is causing the workflow to stall.
"cache": {
"allowResultReuse": true
},
"Effective call caching mode": "CallCachingOff",