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Plink prefix and wdl

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Hi,

I am trying to create a WDL that runs plink and takes as an input a prefix to the bed/bim/fam file

I am using Cromwell and docker to run it

for example:

plink -bfile prefix --recode --out prefix

Cromwell copies over the input files. How do I configure the wdl to use a prefix and grab the files associated with the prefix without explicitly defining the files. Also even if I can get the files copied over how do I pass a prefix to the files?

Thanks,

Ilya


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