Quantcast
Channel: Ask the FireCloud Team — GATK-Forum
Viewing all articles
Browse latest Browse all 1147

Mutect 1 vs Mutect 2

$
0
0

Hello

I am interested in running mutect on wgs. I understand that for snvs mutect 1 is better to run than mutect 2 as mutect 2 has only been validated for indels (or at least mutect 1 is pretty reliable for snvs whereas mutect 2 is not as reliable). Is this true? I'm only interested in running mutect for snvs so I don't need the indel capability of mutect 2.


Viewing all articles
Browse latest Browse all 1147

Trending Articles