Hi, this is my first time analyzing WES data using Firecloud and I have a question about the intervals for WES data. I ran the Mutect2-GATK4 method on a set of single samples (WES) using the Featured/Best practices workspace Somatic-SNVs-Indels-GATK4. Under the method configuration tab, for the "intervals" input variable, I used the "workspace.intervals" attribute. I just want to make sure that the intervals for my WES samples match those of the panel of normals for this workflow. Where in Firecloud or my workspace can I see the intervals for my samples? Is the Broad whole-exome sequencing somewhat "standardized" so that the "workspace.intervals" attribute should be suitable for my WES samples, or do I need to load a specific interval attribute that is specific to my samples?
Thanks!!